Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold117.72

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5691
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29


Found at i:3306 original size:24 final size:24

Alignment explanation


    Indices: 3276--3330  Score: 67
    Period size: 24  Copynumber: 2.3  Consensus size: 24

       3266 CTGTGGAGAT

                   *      *          
       3276 TGATGATGCTT-TGGTGATTGAAGA
          1 TGATGATACTTCTGATGA-TGAAGA

                    *               
       3300 TGATGATATTTCTGATGATGAAGA
          1 TGATGATACTTCTGATGATGAAGA

                   
       3324 TGATGAT
          1 TGATGAT

       3331 CATGAAGATG


Statistics
Matches: 27,  Mismatches: 3, Indels: 2
        0.84            0.09        0.06

Matches are distributed among these distances:
  24   22  0.81
  25    5  0.19

ACGTcount: A:0.29, C:0.04, G:0.29, T:0.38


Consensus pattern (24 bp):   
TGATGATACTTCTGATGATGAAGA
Done.