Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold988.7

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5859
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.28


Found at i:330 original size:3 final size:3

Alignment explanation


    Indices: 314--354  Score: 57
    Period size: 3  Copynumber: 13.7  Consensus size: 3

        304 GGGAGTGTGA

                                                      *            
        314 AGG AGG A-G ACGG AGG AGG AGG AGG AGG AGG AAG AGG AGG AG
          1 AGG AGG AGG A-GG AGG AGG AGG AGG AGG AGG AGG AGG AGG AG

        355 ACAAGGGAGG


Statistics
Matches: 34,  Mismatches: 2, Indels: 4
        0.85            0.05        0.10

Matches are distributed among these distances:
   2    2  0.06
   3   30  0.88
   4    2  0.06

ACGTcount: A:0.37, C:0.02, G:0.61, T:0.00


Consensus pattern (3 bp):   
AGG

Done.