Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold125.442

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2814
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.24


Found at i:1773 original size:24 final size:24

Alignment explanation


    Indices: 1737--1785  Score: 89
    Period size: 24  Copynumber: 2.0  Consensus size: 24

       1727 CAGGTGGCAA

                    *               
       1737 TACCCCAGTAGAAATAGTTGACTG
          1 TACCCCAGCAGAAATAGTTGACTG

                                    
       1761 TACCCCAGCAGAAATAGTTGACTG
          1 TACCCCAGCAGAAATAGTTGACTG

             
       1785 T
          1 T

       1786 CAATCACTGC


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  24   24  1.00

ACGTcount: A:0.33, C:0.22, G:0.20, T:0.24


Consensus pattern (24 bp):   
TACCCCAGCAGAAATAGTTGACTG
Done.