Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold127.386

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 241

Length: 402
ACGTcount: A:0.17, C:0.43, G:0.15, T:0.25


Found at i:116 original size:24 final size:24

Alignment explanation


    Indices: 68--116  Score: 64
    Period size: 24  Copynumber: 2.0  Consensus size: 24

         58 ATGGCTCAAG

                                *   
         68 CACCAACATCTCCTCCATCATCTT
          1 CACCAACATCTCCTCCATCAGCTT

                *                    
         92 CACCTACATCTCCTCCGA-CAGCTT
          1 CACCAACATCTCCTCC-ATCAGCTT

             
        116 C
          1 C

        117 GCCGCCGCCA


Statistics
Matches: 22,  Mismatches: 2, Indels: 2
        0.85            0.08        0.08

Matches are distributed among these distances:
  24   21  0.95
  25    1  0.05

ACGTcount: A:0.22, C:0.47, G:0.04, T:0.27


Consensus pattern (24 bp):   
CACCAACATCTCCTCCATCAGCTT
Done.