Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold132.38

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 450

Length: 750
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28


Found at i:668 original size:2 final size:2

Alignment explanation


    Indices: 657--689  Score: 59
    Period size: 2  Copynumber: 17.0  Consensus size: 2

        647 TATTGTATGC

                                                              
        657 CT CT -T CT CT CT CT CT CT CT CT CT CT CT CT CT CT
          1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT

        690 GTACATATAT


Statistics
Matches: 30,  Mismatches: 0, Indels: 2
        0.94            0.00        0.06

Matches are distributed among these distances:
   1    1  0.03
   2   29  0.97

ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52


Consensus pattern (2 bp):   
CT

Found at i:699 original size:2 final size:2

Alignment explanation


    Indices: 694--718  Score: 50
    Period size: 2  Copynumber: 12.5  Consensus size: 2

        684 CTCTCTGTAC

                                                 
        694 AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT A

        719 CGTACCTTGA


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   23  1.00

ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48


Consensus pattern (2 bp):   
AT

Done.