Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold132.53

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 334

Length: 558
ACGTcount: A:0.22, C:0.28, G:0.24, T:0.26


Found at i:455 original size:6 final size:6

Alignment explanation


    Indices: 444--484  Score: 55
    Period size: 6  Copynumber: 6.8  Consensus size: 6

        434 GGGAAGAGGA

                                          *  *      *      
        444 TGATGG TGATGG TGATGG TGATGG TGGTGA TGATGA TGATG
          1 TGATGG TGATGG TGATGG TGATGG TGATGG TGATGG TGATG

        485 CTATTTCTTT


Statistics
Matches: 32,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
   6   32  1.00

ACGTcount: A:0.20, C:0.00, G:0.46, T:0.34


Consensus pattern (6 bp):   
TGATGG

Found at i:471 original size:15 final size:15

Alignment explanation


    Indices: 442--481  Score: 53
    Period size: 15  Copynumber: 2.7  Consensus size: 15

        432 AGGGGAAGAG

                   *  *    
        442 GATGATGGTGATGGT
          1 GATGATGATGGTGGT

                *          
        457 GATGGTGATGGTGGT
          1 GATGATGATGGTGGT

                      
        472 GATGATGATG
          1 GATGATGATG

        482 ATGCTATTTC


Statistics
Matches: 21,  Mismatches: 4, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  15   21  1.00

ACGTcount: A:0.20, C:0.00, G:0.47, T:0.33


Consensus pattern (15 bp):   
GATGATGATGGTGGT
Done.