Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold132.362

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4050
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.27


Found at i:277 original size:27 final size:27

Alignment explanation


    Indices: 247--300  Score: 72
    Period size: 27  Copynumber: 2.0  Consensus size: 27

        237 AAACACTAGC

                      *                
        247 GGTGCTGCAGGGAGTTCAAATGTTAGT
          1 GGTGCTGCAGCGAGTTCAAATGTTAGT

                *           **         
        274 GGTGTTGCAGCGAGTTTGAATGTTAGT
          1 GGTGCTGCAGCGAGTTCAAATGTTAGT

        301 AGTCGTGCAG


Statistics
Matches: 23,  Mismatches: 4, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  27   23  1.00

ACGTcount: A:0.20, C:0.09, G:0.37, T:0.33


Consensus pattern (27 bp):   
GGTGCTGCAGCGAGTTCAAATGTTAGT

Found at i:2630 original size:27 final size:27

Alignment explanation


    Indices: 2592--2651  Score: 111
    Period size: 27  Copynumber: 2.2  Consensus size: 27

       2582 CAGAAGCAAC

                                       
       2592 TTTAAATGGTGATGATGCAAGTGACGA
          1 TTTAAATGGTGATGATGCAAGTGACGA

                                       
       2619 TTTAAATGGTGATGATGCAAGTGACGA
          1 TTTAAATGGTGATGATGCAAGTGACGA

                  
       2646 TGTTAA
          1 T-TTAA

       2652 TAAGGGGGAT


Statistics
Matches: 32,  Mismatches: 0, Indels: 1
        0.97            0.00        0.03

Matches are distributed among these distances:
  27   28  0.88
  28    4  0.12

ACGTcount: A:0.33, C:0.07, G:0.28, T:0.32


Consensus pattern (27 bp):   
TTTAAATGGTGATGATGCAAGTGACGA
Done.