Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold100.28

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8307
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.31


Found at i:7753 original size:45 final size:45

Alignment explanation


    Indices: 7689--7774  Score: 145
    Period size: 45  Copynumber: 1.9  Consensus size: 45

       7679 ACCAGCATGG

                                                         
       7689 CACTTGCAATCCAGCTGATTCTGGTGTGAGAATCGCATTTGGCAA
          1 CACTTGCAATCCAGCTGATTCTGGTGTGAGAATCGCATTTGGCAA

                       *  *                  *       
       7734 CACTTGCAATCTAGTTGATTCTGGTGTGAGAATTGCATTTG
          1 CACTTGCAATCCAGCTGATTCTGGTGTGAGAATCGCATTTG

       7775 ATCCTGTTGA


Statistics
Matches: 38,  Mismatches: 3, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  45   38  1.00

ACGTcount: A:0.23, C:0.19, G:0.24, T:0.34


Consensus pattern (45 bp):   
CACTTGCAATCCAGCTGATTCTGGTGTGAGAATCGCATTTGGCAA
Done.