Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold1.86

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 486

Length: 810
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31


Found at i:402 original size:33 final size:33

Alignment explanation


    Indices: 351--417  Score: 91
    Period size: 33  Copynumber: 2.0  Consensus size: 33

        341 CAGATGTCAG

                                    *        
        351 AATTGATCAACTCTCTAAAGAATTGTACTCTGA
          1 AATTGATCAACTCTCTAAAGAATTATACTCTGA

                     *                 *      
        384 AATTGATCAGC-CTCCTAAAGAATTATCCTCTGA
          1 AATTGATCAACTCT-CTAAAGAATTATACTCTGA

             
        417 A
          1 A

        418 GGTAATTTTG


Statistics
Matches: 30,  Mismatches: 3, Indels: 2
        0.86            0.09        0.06

Matches are distributed among these distances:
  32    2  0.07
  33   28  0.93

ACGTcount: A:0.36, C:0.21, G:0.12, T:0.31


Consensus pattern (33 bp):   
AATTGATCAACTCTCTAAAGAATTATACTCTGA
Done.