Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold140.165

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 901

Length: 1503
ACGTcount: A:0.37, C:0.17, G:0.31, T:0.15


Found at i:611 original size:21 final size:21

Alignment explanation


    Indices: 587--626  Score: 53
    Period size: 21  Copynumber: 1.9  Consensus size: 21

        577 TACAAAGACT

                                 
        587 ATGCAGCTGAGAAAGCAAAGG
          1 ATGCAGCTGAGAAAGCAAAGG

                **       *     
        608 ATGCTTCTGAGAAGGCAAA
          1 ATGCAGCTGAGAAAGCAAA

        627 AGAGGTAAAG


Statistics
Matches: 16,  Mismatches: 3, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  21   16  1.00

ACGTcount: A:0.40, C:0.15, G:0.30, T:0.15


Consensus pattern (21 bp):   
ATGCAGCTGAGAAAGCAAAGG
Done.