Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold140.432

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 712

Length: 1188
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.23


Found at i:95 original size:3 final size:3

Alignment explanation


    Indices: 80--110  Score: 53
    Period size: 3  Copynumber: 10.3  Consensus size: 3

         70 TCTCCAAACA

                    *                                
         80 CTC CTC TTC CTC CTC CTC CTC CTC CTC CTC C
          1 CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC C

        111 CCAACGACAA


Statistics
Matches: 26,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   3   26  1.00

ACGTcount: A:0.00, C:0.65, G:0.00, T:0.35


Consensus pattern (3 bp):   
CTC

Found at i:358 original size:6 final size:6

Alignment explanation


    Indices: 349--380  Score: 55
    Period size: 6  Copynumber: 5.3  Consensus size: 6

        339 GGATGATGAA

                 *                               
        349 GATCAA GATCAG GATCAG GATCAG GATCAG GA
          1 GATCAG GATCAG GATCAG GATCAG GATCAG GA

        381 GCAGTGTTCT


Statistics
Matches: 25,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   6   25  1.00

ACGTcount: A:0.38, C:0.16, G:0.31, T:0.16


Consensus pattern (6 bp):   
GATCAG

Done.