Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold144.15

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 262

Length: 438
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.18


Found at i:241 original size:15 final size:15

Alignment explanation


    Indices: 223--272  Score: 73
    Period size: 15  Copynumber: 3.3  Consensus size: 15

        213 GCCAGAGAAG

                           
        223 AAGAAAGAAGAGCCC
          1 AAGAAAGAAGAGCCC

                       *   
        238 AAGAAAGAAGAACCC
          1 AAGAAAGAAGAGCCC

                    *     *
        253 AAGAAAGAGGAGCCG
          1 AAGAAAGAAGAGCCC

                 
        268 AAGAA
          1 AAGAA

        273 GCCAGCAGAA


Statistics
Matches: 31,  Mismatches: 4, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  15   31  1.00

ACGTcount: A:0.56, C:0.16, G:0.28, T:0.00


Consensus pattern (15 bp):   
AAGAAAGAAGAGCCC
Done.