Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold103.3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 406

Length: 678
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29


Found at i:310 original size:6 final size:6

Alignment explanation


    Indices: 299--323  Score: 50
    Period size: 6  Copynumber: 4.2  Consensus size: 6

        289 CTCAACCTTT

                                         
        299 ACCCTA ACCCTA ACCCTA ACCCTA A
          1 ACCCTA ACCCTA ACCCTA ACCCTA A

        324 TTTATCTTCT


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   19  1.00

ACGTcount: A:0.36, C:0.48, G:0.00, T:0.16


Consensus pattern (6 bp):   
ACCCTA

Done.