Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: CCACVL1_13958

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2031
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.26


Found at i:58 original size:6 final size:6

Alignment explanation


    Indices: 49--82  Score: 50
    Period size: 6  Copynumber: 5.7  Consensus size: 6

         39 GTCGCAGGAA

                                     *    *        
         49 CAAAAC CAAAAC CAAAAC CAAAGC CAGAAC CAAA
          1 CAAAAC CAAAAC CAAAAC CAAAAC CAAAAC CAAA

         83 GTCAGCAGCA


Statistics
Matches: 24,  Mismatches: 4, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
   6   24  1.00

ACGTcount: A:0.62, C:0.32, G:0.06, T:0.00


Consensus pattern (6 bp):   
CAAAAC

Done.