Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: CCACVL1_15234

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3480
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27


Found at i:1543 original size:33 final size:33

Alignment explanation


    Indices: 1501--1600  Score: 200
    Period size: 33  Copynumber: 3.0  Consensus size: 33

       1491 CTCCACCTCC

                                             
       1501 AGGCCATTCAGAATGGGTTTTAGCACAATCCCA
          1 AGGCCATTCAGAATGGGTTTTAGCACAATCCCA

                                             
       1534 AGGCCATTCAGAATGGGTTTTAGCACAATCCCA
          1 AGGCCATTCAGAATGGGTTTTAGCACAATCCCA

                                             
       1567 AGGCCATTCAGAATGGGTTTTAGCACAATCCCA
          1 AGGCCATTCAGAATGGGTTTTAGCACAATCCCA

             
       1600 A
          1 A

       1601 TCCGTTTGCG


Statistics
Matches: 67,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  33   67  1.00

ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24


Consensus pattern (33 bp):   
AGGCCATTCAGAATGGGTTTTAGCACAATCCCA
Done.