Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: CCACVL1_29147

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2229
ACGTcount: A:0.33, C:0.19, G:0.25, T:0.23


Found at i:1519 original size:15 final size:15

Alignment explanation


    Indices: 1499--1529  Score: 62
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       1489 TCTAGAGCTC

                           
       1499 ATCCTGCTGTTGTCA
          1 ATCCTGCTGTTGTCA

                           
       1514 ATCCTGCTGTTGTCA
          1 ATCCTGCTGTTGTCA

             
       1529 A
          1 A

       1530 GAAGCAGCCT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.16, C:0.26, G:0.19, T:0.39


Consensus pattern (15 bp):   
ATCCTGCTGTTGTCA
Done.