Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: COLO4_15668

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 626

Length: 1044
ACGTcount: A:0.24, C:0.25, G:0.31, T:0.21


Found at i:850 original size:18 final size:18

Alignment explanation


    Indices: 823--865  Score: 50
    Period size: 18  Copynumber: 2.4  Consensus size: 18

        813 GTACTACGAC

                 *     *  *   
        823 GAGGACGAGGATGATGAA
          1 GAGGAGGAGGAGGAAGAA

                              
        841 GAGGAGGAGGAGGAAGAA
          1 GAGGAGGAGGAGGAAGAA

              *    
        859 GAAGAGG
          1 GAGGAGG

        866 CGGTTAGCGG


Statistics
Matches: 21,  Mismatches: 4, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  18   21  1.00

ACGTcount: A:0.42, C:0.02, G:0.51, T:0.05


Consensus pattern (18 bp):   
GAGGAGGAGGAGGAAGAA
Done.