Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: COLO4_24387

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2061
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.27


Found at i:350 original size:17 final size:18

Alignment explanation


    Indices: 328--361  Score: 52
    Period size: 18  Copynumber: 1.9  Consensus size: 18

        318 TTTTGAGGAA

                        *     
        328 GAAAAG-AAAGATGGTTT
          1 GAAAAGCAAAGAGGGTTT

                             
        345 GAAAAGCAAAGAGGGTT
          1 GAAAAGCAAAGAGGGTT

        362 CCTTTGGAGT


Statistics
Matches: 15,  Mismatches: 1, Indels: 1
        0.88            0.06        0.06

Matches are distributed among these distances:
  17    6  0.40
  18    9  0.60

ACGTcount: A:0.47, C:0.03, G:0.32, T:0.18


Consensus pattern (18 bp):   
GAAAAGCAAAGAGGGTTT

Done.