Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: COLO4_31821

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1830
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.28


Found at i:352 original size:24 final size:24

Alignment explanation


    Indices: 316--366  Score: 77
    Period size: 24  Copynumber: 2.1  Consensus size: 24

        306 TATGTCGATT

                                     
        316 CGGTCTGAAAACGAAATCACT-GAC
          1 CGGTCTGAAAACGAAATCA-TGGAC

                    *               
        340 CGGTCTGATAACGAAATCATGGAC
          1 CGGTCTGAAAACGAAATCATGGAC

               
        364 CGG
          1 CGG

        367 GCCGAGACCG


Statistics
Matches: 25,  Mismatches: 1, Indels: 2
        0.89            0.04        0.07

Matches are distributed among these distances:
  23    1  0.04
  24   24  0.96

ACGTcount: A:0.33, C:0.24, G:0.25, T:0.18


Consensus pattern (24 bp):   
CGGTCTGAAAACGAAATCATGGAC
Done.