Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: COLO4_36505
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 621
Length: 1035
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.28
Found at i:253 original size:99 final size:98
Alignment explanation
Indices: 126--437 Score: 384
Period size: 99 Copynumber: 3.2 Consensus size: 98
116 ATGATAATGC
*
126 TCCAAATAACAAAGGTGTAAATGATGATTCTCAATATGCTGATGATGGATACGACTCTCTATATG
1 TCCAAATAACAAAGGTGTAAATGATGATTCTCAGTATGCTGATGATGGATACGACTCTCTATATG
*
191 AAGATTCAACTGAACGACCTATAGATGGAGATAT
66 AAGATTCAACTGAAAGA-CTATAGATGGAGATAT
* * * * * *
225 TCCAAGTAACAAAGGTGTAAATGATGATTCCCAGTATGCTGATGATGGATATGATTCTTTATATA
1 TCCAAATAACAAAGGTGTAAATGATGATTCTCAGTATGCTGATGATGGATACGACTCTCTATATG
* *
290 AAGATT---C-GAAAGAATCTAGA-GGTCATGATAAT
66 AAGATTCAACTGAAAGACTATAGATGG--A-GAT-AT
*
322 GCTCCAAATAACAAAGGTGTAAATGATGATTCTCAGTATGCCGATGATGGATACGACTCTCTATA
1 --TCCAAATAACAAAGGTGTAAATGATGATTCTCAGTATGCTGATGATGGATACGACTCTCTATA
*
387 TGAAGATTCAACT-AAAGGAGCTAGAGATGGAGATAT
64 TGAAGATTCAACTGAAA-GA-CTATAGATGGAGATAT
*
423 TCCAAGTAACAAAGG
1 TCCAAATAACAAAGG
438 AAACCAAGAT
Statistics
Matches: 179, Mismatches: 21, Indels: 26
0.79 0.09 0.12
Matches are distributed among these distances:
93 2 0.01
94 5 0.03
95 6 0.03
96 4 0.02
97 2 0.01
99 142 0.79
101 2 0.01
102 7 0.04
103 3 0.02
104 4 0.02
105 2 0.01
ACGTcount: A:0.38, C:0.14, G:0.21, T:0.28
Consensus pattern (98 bp):
TCCAAATAACAAAGGTGTAAATGATGATTCTCAGTATGCTGATGATGGATACGACTCTCTATATG
AAGATTCAACTGAAAGACTATAGATGGAGATAT
Done.