Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: COLO4_38535

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 570

Length: 951
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.26


Found at i:870 original size:29 final size:29

Alignment explanation


    Indices: 828--883  Score: 94
    Period size: 29  Copynumber: 1.9  Consensus size: 29

        818 CTCGTGATGC

                               *         
        828 TTCACAAGTCAGAGCCCAGGGCTACACAA
          1 TTCACAAGTCAGAGCCCAGAGCTACACAA

                     *                 
        857 TTCACAAGTTAGAGCCCAGAGCTACAC
          1 TTCACAAGTCAGAGCCCAGAGCTACAC

        884 GATCCGATGA


Statistics
Matches: 25,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  29   25  1.00

ACGTcount: A:0.34, C:0.30, G:0.20, T:0.16


Consensus pattern (29 bp):   
TTCACAAGTCAGAGCCCAGAGCTACACAA
Done.