Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: LOC111312513

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2781
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35


Found at i:1204 original size:100 final size:100

Alignment explanation


    Indices: 1015--1201  Score: 304
    Period size: 99  Copynumber: 1.9  Consensus size: 100

       1005 CTGATCTCAG

                            **           *                                   
       1015 CTAGATTAAGTTCTTATGTAAGAATTTATGATCAGTTGTGCTTTGCAAGTTGGAATATTGATGTT
          1 CTAGATTAAGTTCTTACATAAGAATTTATAATCAGTTGTGCTTTGCAAGTTGGAATATTGATGTT

                                               
       1080 TTTATTGTATTTTTGAAGTTAAATTCTGACCTTAT
         66 TTTATTGTATTTTTGAAGTTAAATTCTGACCTTAT

                               *                         *              *    
       1115 CTAGATTAAGTTCTTACATGAGAATTTA-AATCAGTTGTGCTTTGGAAGTTGGAATATTGCTGTT
          1 CTAGATTAAGTTCTTACATAAGAATTTATAATCAGTTGTGCTTTGCAAGTTGGAATATTGATGTT

                          *        
       1179 TTTATTGTATTTTTTAAGTTAAA
         66 TTTATTGTATTTTTGAAGTTAAA

       1202 ATTTATATGT


Statistics
Matches: 80,  Mismatches: 7, Indels: 1
        0.91            0.08        0.01

Matches are distributed among these distances:
  99   55  0.69
 100   25  0.31

ACGTcount: A:0.28, C:0.07, G:0.18, T:0.47


Consensus pattern (100 bp):   
CTAGATTAAGTTCTTACATAAGAATTTATAATCAGTTGTGCTTTGCAAGTTGGAATATTGATGTT
TTTATTGTATTTTTGAAGTTAAATTCTGACCTTAT
Done.