Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: LOC111283710

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 904

Length: 1507
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.30


Found at i:193 original size:3 final size:3

Alignment explanation


    Indices: 185--214  Score: 51
    Period size: 3  Copynumber: 10.0  Consensus size: 3

        175 CCTATCCAGT

                                         *         
        185 TCA TCA TCA TCA TCA TCA TCA TTA TCA TCA
          1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA

        215 CCACCACCAT


Statistics
Matches: 25,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   3   25  1.00

ACGTcount: A:0.33, C:0.30, G:0.00, T:0.37


Consensus pattern (3 bp):   
TCA

Found at i:479 original size:6 final size:6

Alignment explanation


    Indices: 449--478  Score: 51
    Period size: 6  Copynumber: 5.0  Consensus size: 6

        439 AAAGACAGGG

                                        *     
        449 AGAGGA AGAGGA AGAGGA AGAGGA GGAGGA
          1 AGAGGA AGAGGA AGAGGA AGAGGA AGAGGA

        479 GCCAATTTTT


Statistics
Matches: 23,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   6   23  1.00

ACGTcount: A:0.47, C:0.00, G:0.53, T:0.00


Consensus pattern (6 bp):   
AGAGGA
Done.