Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: LOC111290697

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7937
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35


Found at i:4246 original size:142 final size:142

Alignment explanation


    Indices: 3990--4273  Score: 559
    Period size: 142  Copynumber: 2.0  Consensus size: 142

       3980 CACTTGATTC

                                                                             
       3990 ATTAGTTCCTTCTAAACTTTTAGGTATGAACCTACTAGCTGTGTGATTTTTCTGAACTCTAAGAG
          1 ATTAGTTCCTTCTAAACTTTTAGGTATGAACCTACTAGCTGTGTGATTTTTCTGAACTCTAAGAG

                                                                             
       4055 CTAGATATTTAGGGAATTCTATAATTTTCTTTTGCTTTTCTGATCTTAATCAATGATTGCTATAA
         66 CTAGATATTTAGGGAATTCTATAATTTTCTTTTGCTTTTCTGATCTTAATCAATGATTGCTATAA

                        
       4120 ACTAATGAGATA
        131 ACTAATGAGATA

                   *                                                         
       4132 ATTAGTTGCTTCTAAACTTTTAGGTATGAACCTACTAGCTGTGTGATTTTTCTGAACTCTAAGAG
          1 ATTAGTTCCTTCTAAACTTTTAGGTATGAACCTACTAGCTGTGTGATTTTTCTGAACTCTAAGAG

                                                                             
       4197 CTAGATATTTAGGGAATTCTATAATTTTCTTTTGCTTTTCTGATCTTAATCAATGATTGCTATAA
         66 CTAGATATTTAGGGAATTCTATAATTTTCTTTTGCTTTTCTGATCTTAATCAATGATTGCTATAA

                        
       4262 ACTAATGAGATA
        131 ACTAATGAGATA

       4274 TATTGTCTCC


Statistics
Matches: 141,  Mismatches: 1, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
 142  141  1.00

ACGTcount: A:0.29, C:0.14, G:0.15, T:0.42


Consensus pattern (142 bp):   
ATTAGTTCCTTCTAAACTTTTAGGTATGAACCTACTAGCTGTGTGATTTTTCTGAACTCTAAGAG
CTAGATATTTAGGGAATTCTATAATTTTCTTTTGCTTTTCTGATCTTAATCAATGATTGCTATAA
ACTAATGAGATA
Done.