Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: LOC111292449
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2549
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29
Found at i:1351 original size:177 final size:177
Alignment explanation
Indices: 1055--1411 Score: 603
Period size: 177 Copynumber: 2.0 Consensus size: 177
1045 CTAAATTTGG
1055 ATGCTCATACAAAACAAAGTGATGCAGATGATGCAGAAAACGATACAACGGTCTTTAGAAGTACA
1 ATGCTCATACAAAACAAAGTGATGCAGATGATGCAGAAAACGATACAACGGTCTTTAGAAGTACA
1120 AAGAGGAAACGTCCAAACTCTCTTCCACTAGCTGATGTTCAAAAGAAGAATAAGAGATCTGGCCT
66 AAGAGGAAACGTCCAAACTCTCTTCCACTAGCTGATGTTCAAAAGAAGAATAAGAGATCTGGCCT
**
1185 ACAGAGATTGGCTTGTAATATTGGGATGCTGGCAGAGCAATCTAAAA
131 ACAGAGATTGGCTTGTAATATTGGGATGCCAGCAGAGCAATCTAAAA
*
1232 ATGCTCATACAAAACAAAGTGATGCAGATGATGCAGAAAGA-GATACAACGGTCTTTAGAAGTAT
1 ATGCTCATACAAAACAAAGTGATGCAGATGATGCAGAAA-ACGATACAACGGTCTTTAGAAGTAC
* *
1296 AAAGAGGAAACGTCCAATA-TCTC-TCTCACTAGTTGTTGTTCAAAAGAAGAATAAGAGATCTGG
65 AAAGAGGAAACGTCCAA-ACTCTCTTC-CACTAGCTGATGTTCAAAAGAAGAATAAGAGATCTGG
* *
1359 CCTACAGAGATTGGCTTGTAATATTGGGATTCCAGCAGAGCAATCTGAAA
128 CCTACAGAGATTGGCTTGTAATATTGGGATGCCAGCAGAGCAATCTAAAA
1409 ATG
1 ATG
1412 ATAGTGAAGA
Statistics
Matches: 170, Mismatches: 7, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
176 2 0.01
177 166 0.98
178 2 0.01
ACGTcount: A:0.38, C:0.17, G:0.22, T:0.23
Consensus pattern (177 bp):
ATGCTCATACAAAACAAAGTGATGCAGATGATGCAGAAAACGATACAACGGTCTTTAGAAGTACA
AAGAGGAAACGTCCAAACTCTCTTCCACTAGCTGATGTTCAAAAGAAGAATAAGAGATCTGGCCT
ACAGAGATTGGCTTGTAATATTGGGATGCCAGCAGAGCAATCTAAAA
Done.