Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: LOC111295265

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1869
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.29


Found at i:279 original size:12 final size:12

Alignment explanation


    Indices: 262--288  Score: 54
    Period size: 12  Copynumber: 2.2  Consensus size: 12

        252 GTTTGATCTT

                        
        262 ATTCAAGAAGAG
          1 ATTCAAGAAGAG

                        
        274 ATTCAAGAAGAG
          1 ATTCAAGAAGAG

               
        286 ATT
          1 ATT

        289 AAGGGTAAGA


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   15  1.00

ACGTcount: A:0.48, C:0.07, G:0.22, T:0.22


Consensus pattern (12 bp):   
ATTCAAGAAGAG
Done.