Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: LOC111295414

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1785
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26


Found at i:525 original size:21 final size:21

Alignment explanation


    Indices: 484--525  Score: 66
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        474 TGCCCATGCG

                          * *    
        484 GAATCATCATCATCCTTACCA
          1 GAATCATCATCATCATCACCA

                                 
        505 GAATCATCATCATCATCACCA
          1 GAATCATCATCATCATCACCA

        526 TCGAGAGCAA


Statistics
Matches: 19,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  21   19  1.00

ACGTcount: A:0.36, C:0.33, G:0.05, T:0.26


Consensus pattern (21 bp):   
GAATCATCATCATCATCACCA
Done.