Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: LOC111297996

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2883
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.28


Found at i:2615 original size:89 final size:90

Alignment explanation


    Indices: 2513--2693  Score: 346
    Period size: 89  Copynumber: 2.0  Consensus size: 90

       2503 ATAAAATATA

                                                                             
       2513 GCCATGAGATGTTTGTTCACATTTTCTCTACTGCTTATTGTGCATAAATGGTTATCATAAAAGTC
          1 GCCATGAGATGTTTGTTCACATTTTCTCTACTGCTTATTGTGCATAAATGGTTATCATAAAAGTC

                                     
       2578 AA-AAGGAAAACCATAAAAATGGGG
         66 AAGAAGGAAAACCATAAAAATGGGG

                                         *                                   
       2602 GCCATGAGATGTTTGTTCACATTTTCTCTTCTGCTTATTGTGCATAAATGGTTATCATAAAAGTC
          1 GCCATGAGATGTTTGTTCACATTTTCTCTACTGCTTATTGTGCATAAATGGTTATCATAAAAGTC

                                     
       2667 AAGAAGGAAAACCATAAAAATGGGG
         66 AAGAAGGAAAACCATAAAAATGGGG

              
       2692 GC
          1 GC

       2694 ATTCCGAGAA


Statistics
Matches: 90,  Mismatches: 1, Indels: 1
        0.98            0.01        0.01

Matches are distributed among these distances:
  89   66  0.73
  90   24  0.27

ACGTcount: A:0.34, C:0.15, G:0.20, T:0.31


Consensus pattern (90 bp):   
GCCATGAGATGTTTGTTCACATTTTCTCTACTGCTTATTGTGCATAAATGGTTATCATAAAAGTC
AAGAAGGAAAACCATAAAAATGGGG
Done.