Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: LOC111304484

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2257
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30


Found at i:2185 original size:2 final size:2

Alignment explanation


    Indices: 2164--2211  Score: 75
    Period size: 2  Copynumber: 25.5  Consensus size: 2

       2154 CAGTGCGTCT

                                                                          
       2164 TC TC T- TC TC T- TC TC -C TC TC TC TC TC TC TC TC TC TC TC TC
          1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC

                         
       2203 TC TC TC TC T
          1 TC TC TC TC T

       2212 GTGTGGCTAT


Statistics
Matches: 43,  Mismatches: 0, Indels: 6
        0.88            0.00        0.12

Matches are distributed among these distances:
   1    3  0.07
   2   40  0.93

ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52


Consensus pattern (2 bp):   
TC

Done.