Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_12909

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 804

Length: 1340
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.27


Found at i:856 original size:16 final size:17

Alignment explanation


    Indices: 835--866  Score: 57
    Period size: 16  Copynumber: 1.9  Consensus size: 17

        825 TAGGGATCTC

                             
        835 AACAGTACC-GAGCTCT
          1 AACAGTACCTGAGCTCT

                            
        851 AACAGTACCTGAGCTC
          1 AACAGTACCTGAGCTC

        867 ACCCAGCAAA


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  16    9  0.60
  17    6  0.40

ACGTcount: A:0.31, C:0.31, G:0.19, T:0.19


Consensus pattern (17 bp):   
AACAGTACCTGAGCTCT

Done.