Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_12098

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 203

Length: 339
ACGTcount: A:0.36, C:0.18, G:0.22, T:0.24


Found at i:217 original size:18 final size:18

Alignment explanation


    Indices: 194--239  Score: 65
    Period size: 18  Copynumber: 2.6  Consensus size: 18

        184 GAAGAAGTGA

                           *  
        194 AAGATACACCCAAAACAG
          1 AAGATACACCCAAAAAAG

                  *           
        212 AAGATAAACCCAAAAAAG
          1 AAGATACACCCAAAAAAG

                 *    
        230 AAGATCCACC
          1 AAGATACACC

        240 AAAGCCCAAG


Statistics
Matches: 24,  Mismatches: 4, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  18   24  1.00

ACGTcount: A:0.57, C:0.26, G:0.11, T:0.07


Consensus pattern (18 bp):   
AAGATACACCCAAAAAAG
Done.