Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_10533

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 838

Length: 1398
ACGTcount: A:0.32, C:0.13, G:0.23, T:0.32


Found at i:1185 original size:21 final size:20

Alignment explanation


    Indices: 1146--1185  Score: 53
    Period size: 20  Copynumber: 1.9  Consensus size: 20

       1136 ATGTTGGGGA

                       *        
       1146 TTTTGAAGGTGCTTTGAAGG
          1 TTTTGAAGGTGATTTGAAGG

                   *            
       1166 TTTTGAATGTGATGTTGAAG
          1 TTTTGAAGGTGAT-TTGAAG

       1186 AGTCGGCATT


Statistics
Matches: 17,  Mismatches: 2, Indels: 1
        0.85            0.10        0.05

Matches are distributed among these distances:
  20   11  0.65
  21    6  0.35

ACGTcount: A:0.23, C:0.03, G:0.33, T:0.42


Consensus pattern (20 bp):   
TTTTGAAGGTGATTTGAAGG
Done.