Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_18789

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 244

Length: 408
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.24


Found at i:380 original size:2 final size:2

Alignment explanation


    Indices: 373--397  Score: 50
    Period size: 2  Copynumber: 12.5  Consensus size: 2

        363 TAACGACAGT

                                                 
        373 TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA T

        398 GTAGCTTTTA


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   23  1.00

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (2 bp):   
TA

Done.