Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_19180

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 221

Length: 369
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.24


Found at i:330 original size:35 final size:35

Alignment explanation


    Indices: 280--350  Score: 124
    Period size: 35  Copynumber: 2.0  Consensus size: 35

        270 GCAGTTTTTT

                 *                             
        280 TTATTTTGTCACGGCTGGAGTCGTGGGCACGACGC
          1 TTATTCTGTCACGGCTGGAGTCGTGGGCACGACGC

                      *                        
        315 TTATTCTGTCGCGGCTGGAGTCGTGGGCACGACGC
          1 TTATTCTGTCACGGCTGGAGTCGTGGGCACGACGC

             
        350 T
          1 T

        351 GGGCATGACG


Statistics
Matches: 34,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  35   34  1.00

ACGTcount: A:0.13, C:0.24, G:0.35, T:0.28


Consensus pattern (35 bp):   
TTATTCTGTCACGGCTGGAGTCGTGGGCACGACGC
Done.