Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_28067

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 239

Length: 399
ACGTcount: A:0.12, C:0.15, G:0.29, T:0.44


Found at i:368 original size:15 final size:15

Alignment explanation


    Indices: 350--386  Score: 56
    Period size: 15  Copynumber: 2.5  Consensus size: 15

        340 ATTTTACTTT

                        *  
        350 TTTTGTTTTTTTTTA
          1 TTTTGTTTTTTTGTA

                           
        365 TTTTGTTTTTTTGTA
          1 TTTTGTTTTTTTGTA

             *     
        380 TGTTGTT
          1 TTTTGTT

        387 GTTTATTTTG


Statistics
Matches: 20,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  15   20  1.00

ACGTcount: A:0.05, C:0.00, G:0.14, T:0.81


Consensus pattern (15 bp):   
TTTTGTTTTTTTGTA
Done.