Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_15238

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2892
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.23


Found at i:2180 original size:21 final size:24

Alignment explanation


    Indices: 2131--2183  Score: 88
    Period size: 24  Copynumber: 2.2  Consensus size: 24

       2121 GGAGAGGGCT

                                    
       2131 GCTGCAGAGGCTCGAGAAAGAGCA
          1 GCTGCAGAGGCTCGAGAAAGAGCA

                           *       *
       2155 GCTGCAGAGGCTCGACAAAGAGCT
          1 GCTGCAGAGGCTCGAGAAAGAGCA

                 
       2179 GCTGC
          1 GCTGC

       2184 TTCTGCAAGT


Statistics
Matches: 27,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  24   27  1.00

ACGTcount: A:0.28, C:0.25, G:0.36, T:0.11


Consensus pattern (24 bp):   
GCTGCAGAGGCTCGAGAAAGAGCA
Done.