Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_17193

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3858
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.29


Found at i:2703 original size:12 final size:12

Alignment explanation


    Indices: 2686--2711  Score: 52
    Period size: 12  Copynumber: 2.2  Consensus size: 12

       2676 TCTTGGTATT

                        
       2686 GAAGAAGATGAG
          1 GAAGAAGATGAG

                        
       2698 GAAGAAGATGAG
          1 GAAGAAGATGAG

              
       2710 GA
          1 GA

       2712 TATGGATGAA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   14  1.00

ACGTcount: A:0.50, C:0.00, G:0.42, T:0.08


Consensus pattern (12 bp):   
GAAGAAGATGAG
Done.