Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_11513

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3150
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25


Found at i:293 original size:51 final size:51

Alignment explanation


    Indices: 220--321  Score: 152
    Period size: 51  Copynumber: 2.0  Consensus size: 51

        210 GATGCCGAAC

                                   *                            
        220 CAGCAAGGCGGAAACATCGAATCTCAAACATACACTCAG-CTACCACAACAG
          1 CAGCAAGGCGGAAACATCGAATCCCAAACATACACTCAGCCT-CCACAACAG

                    *        *              *                  
        271 CAGCAAGGTGGAAACATTGAATCCCAAACATATACTCAGCCTCCACAACAG
          1 CAGCAAGGCGGAAACATCGAATCCCAAACATACACTCAGCCTCCACAACAG

        322 TACTTAATGG


Statistics
Matches: 46,  Mismatches: 4, Indels: 2
        0.88            0.08        0.04

Matches are distributed among these distances:
  51   44  0.96
  52    2  0.04

ACGTcount: A:0.40, C:0.30, G:0.16, T:0.14


Consensus pattern (51 bp):   
CAGCAAGGCGGAAACATCGAATCCCAAACATACACTCAGCCTCCACAACAG
Done.