Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_20902

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 802

Length: 1338
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30


Found at i:324 original size:30 final size:30

Alignment explanation


    Indices: 288--347  Score: 86
    Period size: 30  Copynumber: 2.0  Consensus size: 30

        278 CTAAAGATAA

                                   *       
        288 TGATGGGGCAGAT-GAGATTGAGTTTATGAC
          1 TGATGGGGCAGATAG-GATTGAGCTTATGAC

                                *         
        318 TGATGGGGCAGATAGGATTGGGCTTATGAC
          1 TGATGGGGCAGATAGGATTGAGCTTATGAC

        348 CGATATTTCG


Statistics
Matches: 27,  Mismatches: 2, Indels: 2
        0.87            0.06        0.06

Matches are distributed among these distances:
  30   26  0.96
  31    1  0.04

ACGTcount: A:0.25, C:0.08, G:0.38, T:0.28


Consensus pattern (30 bp):   
TGATGGGGCAGATAGGATTGAGCTTATGAC
Done.