Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_15812

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 210

Length: 351
ACGTcount: A:0.17, C:0.34, G:0.19, T:0.31


Found at i:265 original size:24 final size:24

Alignment explanation


    Indices: 233--302  Score: 131
    Period size: 24  Copynumber: 2.9  Consensus size: 24

        223 AACGTCCCTC

                                    
        233 CTTCAGCACCTGGCTTTCCTGGCT
          1 CTTCAGCACCTGGCTTTCCTGGCT

                                    
        257 CTTCAGCACCTGGCTTTCCTGGCT
          1 CTTCAGCACCTGGCTTTCCTGGCT

                    *             
        281 CTTCAGCATCTGGCTTTCCTGG
          1 CTTCAGCACCTGGCTTTCCTGG

        303 TTTCCCTTCG


Statistics
Matches: 45,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  24   45  1.00

ACGTcount: A:0.09, C:0.36, G:0.21, T:0.34


Consensus pattern (24 bp):   
CTTCAGCACCTGGCTTTCCTGGCT
Done.