Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Cotton_A_08362
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3717
ACGTcount: A:0.37, C:0.17, G:0.23, T:0.22
Found at i:807 original size:201 final size:201
Alignment explanation
Indices: 518--940 Score: 720
Period size: 201 Copynumber: 2.1 Consensus size: 201
508 ATACCCTTGA
* *
518 AAGAAGCTGCTAGTACAGAAGAAACAAAAGCAGAAGCTTGCCTAGTTCCTGCAGGTGGAGATGAA
1 AAGAAGCTGCTAGTACAGATGAAACAAAAGCAGAAGCTTGCCTAGTTCCGGCAGGTGGAGATGAA
* * *
583 AGTACTTGTGGAACCAAGACAGGCCAGGTTTCCGGTGATCGTGGTGGAAAGGAATATCCAAGTGT
66 AGTAATCGTGGAACCAAGACAGGCCAGGTTTCCGGTGATCGTGGTGGAAAGGAATATCCAAGTAT
648 TGACAAGCAGAAACCTGATGAGAAAGAAGAAGATATTACTGTAAATGATGAAACTGAGGAACAAT
131 TGACAAGCAGAAACCTGATGAGAAAGAAGAAGATATTACTGTAAATGATGAAACTGAGGAACAAT
713 CCTCAC
196 CCTCAC
* *
719 AAGAAGCTGCTAATACAGATGAAACAAATGCAGAAGCTTGCCTAGTTCCGGCAGGTGGAGATGAA
1 AAGAAGCTGCTAGTACAGATGAAACAAAAGCAGAAGCTTGCCTAGTTCCGGCAGGTGGAGATGAA
** * *
784 AGTAATCGTGGAACTGAGACAGGCCAGGTTTCTGGTGATCGTGGTGGAATGGAATATCCAAGTAT
66 AGTAATCGTGGAACCAAGACAGGCCAGGTTTCCGGTGATCGTGGTGGAAAGGAATATCCAAGTAT
**
849 TGACAAGCAGACCCCTGATGAGAAAGAAGAAGATATTACTGTAAATGATGAAACTGAGGAACAAT
131 TGACAAGCAGAAACCTGATGAGAAAGAAGAAGATATTACTGTAAATGATGAAACTGAGGAACAAT
914 CCTCAC
196 CCTCAC
*
920 AAGAAGCTGCTAGCACAGATG
1 AAGAAGCTGCTAGTACAGATG
941 TATTAGAGAG
Statistics
Matches: 207, Mismatches: 15, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
201 207 1.00
ACGTcount: A:0.37, C:0.17, G:0.27, T:0.20
Consensus pattern (201 bp):
AAGAAGCTGCTAGTACAGATGAAACAAAAGCAGAAGCTTGCCTAGTTCCGGCAGGTGGAGATGAA
AGTAATCGTGGAACCAAGACAGGCCAGGTTTCCGGTGATCGTGGTGGAAAGGAATATCCAAGTAT
TGACAAGCAGAAACCTGATGAGAAAGAAGAAGATATTACTGTAAATGATGAAACTGAGGAACAAT
CCTCAC
Done.