Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_07940

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2583
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27


Found at i:379 original size:12 final size:12

Alignment explanation


    Indices: 362--387  Score: 52
    Period size: 12  Copynumber: 2.2  Consensus size: 12

        352 CCTGATTTTT

                        
        362 CTTCAGCTTCTC
          1 CTTCAGCTTCTC

                        
        374 CTTCAGCTTCTC
          1 CTTCAGCTTCTC

              
        386 CT
          1 CT

        388 GGTTCAGTTC


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   14  1.00

ACGTcount: A:0.08, C:0.42, G:0.08, T:0.42


Consensus pattern (12 bp):   
CTTCAGCTTCTC
Done.