Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_03190

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4949
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29


Found at i:4591 original size:48 final size:48

Alignment explanation


    Indices: 4520--4612  Score: 177
    Period size: 48  Copynumber: 1.9  Consensus size: 48

       4510 AGAAGATAGC

                                                            
       4520 TGAGATTCCTTCTCCGACTAACGATTCTTCAAGGACAGCATATGGAGT
          1 TGAGATTCCTTCTCCGACTAACGATTCTTCAAGGACAGCATATGGAGT

                            *                            
       4568 TGAGATTCCTTCTCCGGCTAACGATTCTTCAAGGACAGCATATGG
          1 TGAGATTCCTTCTCCGACTAACGATTCTTCAAGGACAGCATATGG

       4613 TTTTAGCTCC


Statistics
Matches: 44,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  48   44  1.00

ACGTcount: A:0.26, C:0.24, G:0.22, T:0.29


Consensus pattern (48 bp):   
TGAGATTCCTTCTCCGACTAACGATTCTTCAAGGACAGCATATGGAGT
Done.