Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_17030

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 388

Length: 648
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27


Found at i:607 original size:21 final size:21

Alignment explanation


    Indices: 583--635  Score: 70
    Period size: 21  Copynumber: 2.5  Consensus size: 21

        573 TGCAATATTT

                                 
        583 TTTGAACCAGAGCCAATTCCA
          1 TTTGAACCAGAGCCAATTCCA

                         * *     
        604 TTTGAACCAGAGCTAGTTCCA
          1 TTTGAACCAGAGCCAATTCCA

            **         
        625 ACTGAACCAGA
          1 TTTGAACCAGA

        636 ATATGGAGGT


Statistics
Matches: 28,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  21   28  1.00

ACGTcount: A:0.34, C:0.26, G:0.17, T:0.23


Consensus pattern (21 bp):   
TTTGAACCAGAGCCAATTCCA
Done.