Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_10026

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 516

Length: 861
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30


Found at i:271 original size:12 final size:12

Alignment explanation


    Indices: 254--279  Score: 52
    Period size: 12  Copynumber: 2.2  Consensus size: 12

        244 GTTGTAGAGA

                        
        254 CTATATACATAG
          1 CTATATACATAG

                        
        266 CTATATACATAG
          1 CTATATACATAG

              
        278 CT
          1 CT

        280 TATGCAACCA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   14  1.00

ACGTcount: A:0.38, C:0.19, G:0.08, T:0.35


Consensus pattern (12 bp):   
CTATATACATAG
Done.