Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_22854

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 617

Length: 1029
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29


Found at i:84 original size:9 final size:9

Alignment explanation


    Indices: 70--96  Score: 54
    Period size: 9  Copynumber: 3.0  Consensus size: 9

         60 GTCTCATCAT

                     
         70 TCTTCTCCA
          1 TCTTCTCCA

                     
         79 TCTTCTCCA
          1 TCTTCTCCA

                     
         88 TCTTCTCCA
          1 TCTTCTCCA

         97 CCAGATCTTT


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   18  1.00

ACGTcount: A:0.11, C:0.44, G:0.00, T:0.44


Consensus pattern (9 bp):   
TCTTCTCCA
Done.