Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_05121

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 322

Length: 537
ACGTcount: A:0.22, C:0.36, G:0.23, T:0.20


Found at i:131 original size:33 final size:33

Alignment explanation


    Indices: 94--263  Score: 304
    Period size: 33  Copynumber: 5.2  Consensus size: 33

         84 AGCCCCAGCC

                                             
         94 CCAGCCCCTTCACCCGGTACACACTCGCCCGCG
          1 CCAGCCCCTTCACCCGGTACACACTCGCCCGCG

                               *           * 
        127 CCAGCCCCTTCACCCGGTATACACTCGCCCGAG
          1 CCAGCCCCTTCACCCGGTACACACTCGCCCGCG

                 *                           
        160 CCAGCTCCTTCACCCGGTACACACTCGCCCGCG
          1 CCAGCCCCTTCACCCGGTACACACTCGCCCGCG

                                             
        193 CCAGCCCCTTCACCCGGTACACACTCGCCCGCG
          1 CCAGCCCCTTCACCCGGTACACACTCGCCCGCG

                          *                  
        226 CCAGCCCCTTCACCTGGTACACACTCGCCCGCG
          1 CCAGCCCCTTCACCCGGTACACACTCGCCCGCG

                 
        259 CCAGC
          1 CCAGC

        264 ACCATTTAAT


Statistics
Matches: 130,  Mismatches: 7, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  33  130  1.00

ACGTcount: A:0.16, C:0.52, G:0.18, T:0.14


Consensus pattern (33 bp):   
CCAGCCCCTTCACCCGGTACACACTCGCCCGCG

Done.