Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_08953

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 855

Length: 1425
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30


Found at i:666 original size:12 final size:12

Alignment explanation


    Indices: 649--674  Score: 52
    Period size: 12  Copynumber: 2.2  Consensus size: 12

        639 AAGTTACCCA

                        
        649 TTGGCTAAAGTT
          1 TTGGCTAAAGTT

                        
        661 TTGGCTAAAGTT
          1 TTGGCTAAAGTT

              
        673 TT
          1 TT

        675 CGATTCATGT


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   14  1.00

ACGTcount: A:0.23, C:0.08, G:0.23, T:0.46


Consensus pattern (12 bp):   
TTGGCTAAAGTT
Done.