Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_24675

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 200

Length: 213
ACGTcount: A:0.31, C:0.31, G:0.19, T:0.20


Found at i:48 original size:6 final size:6

Alignment explanation


    Indices: 37--61  Score: 50
    Period size: 6  Copynumber: 4.2  Consensus size: 6

         27 CGCCAAGAAG

                                         
         37 CAAAGC CAAAGC CAAAGC CAAAGC C
          1 CAAAGC CAAAGC CAAAGC CAAAGC C

         62 TCCCACCAAG


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   19  1.00

ACGTcount: A:0.48, C:0.36, G:0.16, T:0.00


Consensus pattern (6 bp):   
CAAAGC

Done.