Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_16016

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 597

Length: 996
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24


Found at i:936 original size:12 final size:12

Alignment explanation


    Indices: 919--951  Score: 66
    Period size: 12  Copynumber: 2.8  Consensus size: 12

        909 GGAAAACAAT

                        
        919 GGCGGTGGTGGC
          1 GGCGGTGGTGGC

                        
        931 GGCGGTGGTGGC
          1 GGCGGTGGTGGC

                     
        943 GGCGGTGGT
          1 GGCGGTGGT

        952 AACAACAATC


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   21  1.00

ACGTcount: A:0.00, C:0.15, G:0.67, T:0.18


Consensus pattern (12 bp):   
GGCGGTGGTGGC
Done.